Liang Xu

This is Liang's blog for life and work archive.

categories

ABC Algorithm BB life Bash Blogging Blogging tech Data visualization Deep learning GPU programming GUI Machine learning Modeling Numerical method OSM Phd projects Python R R Research Seminar Stochastic differential equations bioinformatics ggradar2 phylogeny function pyCUDA sed trait-population model
ABC

A user-friendly approximate Bayesian computation package in Python with an application on the coronavirus outbreak in the Netherlands

Approximate Bayesian Computation: standard version and its variant ABC-SMC

Algorithm

A user-friendly approximate Bayesian computation package in Python with an application on the coronavirus outbreak in the Netherlands

Approximate Bayesian Computation: standard version and its variant ABC-SMC

BB life

Back to life!

Goodbye Groningen! Hello Oxford!

Hello World

Bash

Bash & R: Dealing with big data; read it! don't source it!

Sed again: run on Ubuntu to avoid weird behavior

Sed:a fast way to extract information from data

Blogging

Blogging tech

Blogging tech

Blogging tech

Data visualization

ggradar2: Help document

ggradar2: deploy a radar to your data

Draw the evolution of SMC

Color your plots

Deep learning

Machine learning on biology S2: how does a neural network work mathematically?

Machine learning on biology S1: model classification via ML

GPU programming

PyCUDA series 3: matrix multiplication using multiple blocks

PyCUDA series 2: a simple matrix algebra and speed test

PyCUDA series 1: Build GPU programming environment

GUI

GUI your model - a way to sell theoretical models to empiricists

Machine learning

Machine learning on biology S2: how does a neural network work mathematically?

Machine learning on biology S1: model classification via ML

Modeling

Several numerical schemes for 1 D advection

Data visualization: develop a Shiny app to track COVID-19 spread.

The government should take a fast reaction to prevent COVID-19 development

Numerical method

Partial least square regression

OSM

Supplementary material to the talk ME53A-01 -- Ocean Science Meeting 2024

Phd projects

An animation to show how traits of species evolve with their abundance

PhD Project 1-Detecting local diversity-dependence in diversification

Python

GUI your model - a way to sell theoretical models to empiricists

R

R update all packages

phylo2L function

pruneL function

R

ggradar2: Help document

ggradar2: deploy a radar to your data

Draw the evolution of SMC

Color your plots

Research

Resource competition seminar 2024 Jan - April

Supplementary material to the talk ME53A-01 -- Ocean Science Meeting 2024

Get genomes, annotate genomes and analyze genomes

The first week of getting into the realm of bioinformatics

Several numerical schemes for 1 D advection

Might be a good presentation for theoretical models?

Data visualization: develop a Shiny app to track COVID-19 spread.

The government should take a fast reaction to prevent COVID-19 development

A user-friendly approximate Bayesian computation package in Python with an application on the coronavirus outbreak in the Netherlands

GUI your model - a way to sell theoretical models to empiricists

Approximate Bayesian Computation: standard version and its variant ABC-SMC

An animation to show how traits of species evolve with their abundance

Bash & R: Dealing with big data; read it! don't source it!

Machine learning on biology S2: how does a neural network work mathematically?

Machine learning on biology S1: model classification via ML

PyCUDA series 3: matrix multiplication using multiple blocks

PyCUDA series 2: a simple matrix algebra and speed test

Sed again: run on Ubuntu to avoid weird behavior

PyCUDA series 1: Build GPU programming environment

ggradar2: Help document

ggradar2: deploy a radar to your data

Draw the evolution of SMC

Color your plots

R update all packages

Sed:a fast way to extract information from data

Partial least square regression

Deriving the Fokker-Planck equation from a stochastic differential equation

phylo2L function

pruneL function

PhD Project 1-Detecting local diversity-dependence in diversification

Seminar

Resource competition seminar 2024 Jan - April

Stochastic differential equations

Deriving the Fokker-Planck equation from a stochastic differential equation

bioinformatics

Get genomes, annotate genomes and analyze genomes

The first week of getting into the realm of bioinformatics

ggradar2

ggradar2: Help document

ggradar2: deploy a radar to your data

phylogeny function

phylo2L function

pruneL function

pyCUDA

PyCUDA series 3: matrix multiplication using multiple blocks

PyCUDA series 2: a simple matrix algebra and speed test

PyCUDA series 1: Build GPU programming environment

sed

Bash & R: Dealing with big data; read it! don't source it!

Sed again: run on Ubuntu to avoid weird behavior

Sed:a fast way to extract information from data

trait-population model

An animation to show how traits of species evolve with their abundance